This is a design defect, not a manufacturing defect.
In case of design defects in highly regulated fields (cars), there is often a campaign to make things right. When Intel processors couldn't divide properly, they had a campaign to replace them. In this case, it looks like we're not getting much.
When the Kaba Simplex (a commercial door lock) was discovered to be easily bypassed by holding a magnet near it, yes, it was in fact a design defect and the company had to correct it by giving repair kits out to purchasers.
Intel and others did give out a repair kit; they give you the option of disabling hyperthreading and a whole host of other optimizations. Those optimizations are both what provides this new side-channel of attack, and an immense speedup when they're enabled. You can't have one without the other.
Yet they are still advertising the number of threads without any mention of the vulnerabilities involved, well after those vulnerabilities have been disclosed. It's deceptive advertising at best.
Is this a manufacturing defect in CPUs?
(The defect is baked into hard silicon out in the world, so the analogy is plausible.)